Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs113156522
Alleles:
reference
Aancestral
alternate
Gderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome
10
position 31,815,553
(GRCh37)
Explore rs113156522
on Ensembl!
Allele frequency in SGDP ⇪
Sample | 99.3% |
0.7% |
|
AFR |
95.5% |
4.5% |
|
AMR |
100.0% |
0.0% |
|
CAS |
100.0% |
0.0% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
Data source | Estimated age of G allele |
# pairs = concordant + discordant | Quality score |
---|---|---|---|
Genomes in SGDP | 3,111.1 generations | 104 = 4 + 100 | 1.000 |
Pairwise results table
Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
---|---|---|---|---|---|---|---|---|
S_Ju_hoan_North-2B + S_Ju_hoan_North-1B | Concordant | SGDP | 31,556,603 – 31,975,519 |
418,915.5 |
0.25959952 |
29 | 409.7591 | 1,415.5 |
S_Ju_hoan_North-1B + B_Ju_hoan_North-4B | Concordant | SGDP | 30,530,686 – 31,870,414 |
1,339,728.0 |
1.75823695 |
86 | 2,050.6590 | 838.8 |
S_Ju_hoan_North-2B + B_Ju_hoan_North-4B | Concordant | SGDP | 31,556,603 – 31,873,306 |
316,702.5 |
0.10924376 |
26 | 240.4122 | 2,163.0 |
S_Ju_hoan_North-2A + B_Ju_hoan_North-4B | Concordant | SGDP | 30,733,168 – 31,870,414 |
1,137,246.0 |
1.17646223 |
69 | 1,488.0479 | 927.4 |
S_Ju_hoan_North-2B + S_Papuan-3B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Even-3B | Discordant | SGDP | 31,792,748 – 31,824,938 |
32,190.0 |
0.00210881 |
7 | 18.1383 | 7,718.5 |
S_Ju_hoan_North-2B + S_Turkish-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Kyrgyz-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Hungarian-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Kalash-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Tubalar-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Tubalar-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Quechua-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Mixe-3A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Zapotec-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Papuan-12B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Mala-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Yakut-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Finnish-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Tlingit-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Palestinian-3A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Aleut-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Chechen-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Even-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
B_Ju_hoan_North-4B + S_Papuan-9B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Tu-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Mixtec-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Korean-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Burmese-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + B_Australian-4A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Papuan-7A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Papuan-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Relli-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Papuan-10B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Mala-3B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Papuan-5A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Punjabi-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Papuan-13A | Discordant | SGDP | 31,815,548 – 31,824,938 |
9,390.0 |
0.00075081 |
4 | 6.1078 | 13,097.9 |
S_Ju_hoan_North-2B + S_French-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Papuan-4A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Icelandic-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Papuan-4B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Tuscan-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Papuan-14B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Polish-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Papuan-7A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_North_Ossetian-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Chukchi-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Piapoco-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Eskimo_Naukan-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
B_Ju_hoan_North-4B + S_French-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Kapu-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Mixe-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Brahmin-2A | Discordant | SGDP | 31,815,548 – 31,824,938 |
9,390.0 |
0.00075081 |
4 | 6.1078 | 13,097.9 |
S_Ju_hoan_North-2B + S_Tubalar-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Hazara-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Tujia-1A | Discordant | SGDP | 31,796,722 – 31,824,938 |
28,215.5 |
0.00086200 |
7 | 15.2330 | 9,190.5 |
S_Ju_hoan_North-2A + S_Sindhi-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Maori-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Luhya-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Bougainville-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Albanian-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Papuan-12A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Bulgarian-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Mansi-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_English-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Irula-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Estonian-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Khonda_Dora-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Basque-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Madiga-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Georgian-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Burusho-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Georgian-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Estonian-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Georgian-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Saami-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Icelandic-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Greek-2B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Iraqi_Jew-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Icelandic-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Iraqi_Jew-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Samaritan-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Sardinian-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Bergamo-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Kyrgyz-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Jordanian-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Polish-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Norwegian-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Lezgin-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Russian-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Adygei-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Lezgin-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Spanish-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Turkish-2A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + B_Crete-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2B + S_Chane-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + B_Papuan-15B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
B_Ju_hoan_North-4B + S_Mozabite-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + B_Sardinian-3B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
B_Ju_hoan_North-4B + S_Finnish-1B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + B_Karitiana-3B | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
B_Ju_hoan_North-4B + S_Sardinian-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
S_Ju_hoan_North-2A + S_Karitiana-1A | Discordant | SGDP | 31,815,548 – 31,815,554 |
6.5 |
0.00000002 |
4 | 1.0031 | 79,750.2 |
Data shown in this table can be downloaded from this page.
α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
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