Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs191219596
Alleles:
reference
Gancestral
alternate
Aderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome
10
position 31,634,377
(GRCh37)
Explore rs191219596
on Ensembl!
Allele frequency in SGDP ⇪
Sample | 99.3% |
0.7% |
|
AFR |
95.5% |
4.5% |
|
AMR |
100.0% |
0.0% |
|
CAS |
100.0% |
0.0% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
Data source | Estimated age of A allele |
# pairs = concordant + discordant | Quality score |
---|---|---|---|
Genomes in SGDP | 4,508.7 generations | 103 = 5 + 98 | 1.000 |
Pairwise results table
Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
---|---|---|---|---|---|---|---|---|
S_Ju_hoan_North-1B + B_Ju_hoan_North-4B | Concordant | SGDP | 30,530,686 – 31,870,414 |
1,339,728.0 |
1.75823695 |
86 | 2,050.6590 | 838.8 |
S_Ju_hoan_North-2A + S_Ju_hoan_North-1B | Concordant | SGDP | 31,068,515 – 33,707,610 |
2,639,095.5 |
1.74323778 |
106 | 2,662.3561 | 796.3 |
S_Ju_hoan_North-2B + B_Ju_hoan_North-4B | Concordant | SGDP | 31,556,603 – 31,873,306 |
316,702.5 |
0.10924376 |
26 | 240.4122 | 2,163.0 |
S_Ju_hoan_North-2A + B_Ju_hoan_North-4B | Concordant | SGDP | 30,733,168 – 31,870,414 |
1,137,246.0 |
1.17646223 |
69 | 1,488.0479 | 927.4 |
S_Ju_hoan_North-2A + S_Ju_hoan_North-2B | Concordant | SGDP | 31,556,603 – 31,870,414 |
313,810.5 |
0.04203703 |
26 | 185.2587 | 2,806.9 |
S_Ju_hoan_North-2B + S_Yakut-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Mozabite-1A | Discordant | SGDP | 31,628,003 – 31,634,383 |
6,379.5 |
0.00020402 |
6 | 4.2254 | 28,399.8 |
S_Ju_hoan_North-2B + S_Adygei-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Icelandic-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Punjabi-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Papuan-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Mongola-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Mongola-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Zapotec-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Daur-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Maori-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Even-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Madiga-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Naxi-3B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Estonian-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Yi-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Orcadian-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Tujia-1A | Discordant | SGDP | 31,632,431 – 31,634,383 |
1,951.5 |
0.00005159 |
4 | 1.9780 | 40,445.0 |
S_Ju_hoan_North-2B + S_Yemenite_Jew-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Uygur-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Khomani_San-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Naxi-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Yakut-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Japanese-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Even-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Burmese-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Korean-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Thai-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Papuan-5B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Kinh-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Mala-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + B_Australian-4A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Burusho-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Papuan-3B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Armenian-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Papuan-14A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Saami-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Papuan-9A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Sardinian-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Hawaiian-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Abkhasian-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Eskimo_Naukan-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Tajik-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Yadava-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + B_Karitiana-3A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Kusunda-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + B_Sardinian-3A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Pathan-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Karitiana-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Brahui-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Mixe-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Brahui-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Even-3B | Discordant | SGDP | 31,632,431 – 31,634,383 |
1,951.5 |
0.00005159 |
4 | 1.9780 | 40,445.0 |
S_Ju_hoan_North-2A + S_Hazara-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_BantuTswana-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Kalash-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Even-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Burusho-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_She-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Sindhi-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Ami-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Punjabi-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Papuan-8A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Armenian-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Papuan-12A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Bulgarian-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Irula-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Czech-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Khonda_Dora-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Finnish-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Makrani-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Greek-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Sindhi-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Hungarian-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Abkhasian-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Icelandic-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Czech-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Icelandic-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Saami-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Iranian-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Georgian-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_BedouinB-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Iranian-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Sardinian-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Kyrgyz-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Tuscan-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Polish-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Kyrgyz-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Chechen-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Russian-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Spanish-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Russian-2A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Turkish-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Lezgin-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + B_Han-3B | Discordant | SGDP | 31,632,431 – 31,634,383 |
1,951.5 |
0.00005159 |
4 | 1.9780 | 40,445.0 |
S_Ju_hoan_North-2A + S_Yemenite_Jew-1A | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2B + S_Pima-2B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
S_Ju_hoan_North-2A + S_Yemenite_Jew-1B | Discordant | SGDP | 31,634,367 – 31,634,383 |
15.5 |
0.00000041 |
4 | 1.0078 | 79,383.0 |
Data shown in this table can be downloaded from this page.
α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
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