Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs577772203
Alleles:
reference
Gancestral
alternate
Aderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome
10
position 31,644,038
(GRCh37)
Explore rs577772203
on Ensembl!
Allele frequency in SGDP ⇪
Sample | 99.5% |
0.5% |
|
AFR |
96.6% |
3.4% |
|
AMR |
100.0% |
0.0% |
|
CAS |
100.0% |
0.0% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
Data source | Estimated age of A allele |
# pairs = concordant + discordant | Quality score |
---|---|---|---|
Genomes in SGDP | 1,453.0 generations | 97 = 3 + 94 | 0.667 |
Pairwise results table
Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
---|---|---|---|---|---|---|---|---|
S_Ju_hoan_North-1B + B_Ju_hoan_North-4B | Concordant | SGDP | 30,530,686 – 31,872,639 |
1,341,953.5 |
1.82041277 |
76 | 2,101.4679 | 723.3 |
S_Ju_hoan_North-2B + B_Ju_hoan_North-4B | Concordant | SGDP | 31,556,603 – 31,873,306 |
316,702.5 |
0.10924376 |
26 | 240.4122 | 2,163.0 |
S_Ju_hoan_North-2B + S_Ju_hoan_North-1B | Concordant | SGDP | 31,556,603 – 31,975,519 |
418,915.5 |
0.25959952 |
29 | 409.7591 | 1,415.5 |
S_Ju_hoan_North-2B + S_Iranian-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Saami-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Icelandic-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Pima-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Bulgarian-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Russian-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Turkish-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Even-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Yakut-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Yakut-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Even-3A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Mongola-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Mongola-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Mixe-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Tuscan-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_BantuTswana-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Kyrgyz-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Even-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Adygei-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Naxi-3A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + B_Han-3B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Daur-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Zapotec-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Yi-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Estonian-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Tujia-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Georgian-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Uygur-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Icelandic-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Naxi-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Sardinian-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_She-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Kyrgyz-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Korean-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Polish-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Burmese-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Chechen-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Ami-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Tajik-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Sindhi-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Yemenite_Jew-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Punjabi-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Khomani_San-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Armenian-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Thai-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Mozabite-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Punjabi-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Kinh-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Abkhasian-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + B_Australian-4B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Armenian-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Maori-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Czech-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Papuan-3A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Finnish-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Papuan-3B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Saami-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Papuan-8B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Hungarian-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Papuan-5B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Icelandic-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Papuan-14A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Iranian-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Papuan-9A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_BedouinB-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Papuan-12B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Sardinian-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Papuan-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Jordanian-3A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Hawaiian-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Kyrgyz-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Irula-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Orcadian-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Mala-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Russian-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Khonda_Dora-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Abkhasian-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Madiga-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Lezgin-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Kusunda-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Spanish-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Makrani-1B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Turkish-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Pathan-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Yemenite_Jew-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Brahui-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + B_French-3B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Hazara-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + B_Sardinian-3B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Kalash-1A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Karitiana-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-2B + S_Burusho-2A | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
S_Ju_hoan_North-1B + S_Ju_hoan_North-2A | Discordant | SGDP | 31,068,515 – 33,706,445 |
2,637,930.5 |
1.67831762 |
205 | 2,609.8607 | 1,571.0 |
S_Ju_hoan_North-2B + S_Burusho-2B | Discordant | SGDP | 31,643,995 – 31,644,131 |
136.0 |
0.00000658 |
4 | 1.0705 | 74,728.4 |
Data shown in this table can be downloaded from this page.
α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
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