Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs770117710
Alleles:
reference
Tancestral
alternate
Cderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome
2
position 136,566,027
(GRCh37)
Explore rs770117710
on Ensembl!
Allele frequency in SGDP ⇪
Sample | 99.6% |
0.4% |
|
AFR |
100.0% |
0.0% |
|
AMR |
100.0% |
0.0% |
|
CAS |
100.0% |
0.0% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
98.7% |
1.3% |
|
reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
Data source | Estimated age of C allele |
# pairs = concordant + discordant | Quality score |
---|---|---|---|
Genomes in SGDP | 466.3 generations | 95 = 1 + 94 | 0.989 |
Pairwise results table
Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
---|---|---|---|---|---|---|---|---|
S_Abkhasian-1B + S_North_Ossetian-2B | Concordant | SGDP | 136,389,477 – 136,787,291 |
397,814.0 |
0.08369446 |
7 | 258.9063 | 540.7 |
S_North_Ossetian-2B + S_Czech-2A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
19 | 111.6004 | 3,405.0 |
S_North_Ossetian-2B + S_Punjabi-3B | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
7 | 56.6974 | 2,469.2 |
S_North_Ossetian-2B + S_Burusho-1B | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
8 | 56.6974 | 2,822.0 |
S_Abkhasian-1B + S_Mixe-2A | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
31 | 441.4785 | 1,404.4 |
S_North_Ossetian-2B + S_Yemenite_Jew-2B | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
7 | 56.6974 | 2,469.2 |
S_North_Ossetian-2B + S_Norwegian-1B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_North_Ossetian-2B + S_Basque-1A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_Abkhasian-1B + S_Oroqen-2B | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
38 | 441.4785 | 1,721.5 |
S_Abkhasian-1B + S_Oroqen-1A | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_Abkhasian-1B + S_Mansi-1A | Discordant | SGDP | 135,597,516 – 136,785,841 |
1,188,325.0 |
0.26173649 |
33 | 780.7852 | 845.3 |
S_Abkhasian-1B + S_Eskimo_Chaplin-1B | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
31 | 441.4785 | 1,404.4 |
S_Abkhasian-1B + S_Even-2A | Discordant | SGDP | 135,760,098 – 136,762,052 |
1,001,954.0 |
0.08851659 |
37 | 552.7512 | 1,338.8 |
S_Abkhasian-1B + S_Eskimo_Sireniki-1B | Discordant | SGDP | 136,555,141 – 136,762,052 |
206,910.5 |
0.02601890 |
7 | 121.1322 | 1,155.8 |
S_North_Ossetian-2B + S_Estonian-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_North_Ossetian-2B + S_Finnish-3B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
19 | 111.6004 | 3,405.0 |
S_Abkhasian-1B + S_Hezhen-1B | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
29 | 441.4785 | 1,313.8 |
S_North_Ossetian-2B + S_Samaritan-1B | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_Abkhasian-1B + S_Dai-2B | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
39 | 441.4785 | 1,766.8 |
S_North_Ossetian-2B + S_North_Ossetian-1B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_Abkhasian-1B + S_Itelman-1A | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
32 | 441.4785 | 1,449.7 |
S_North_Ossetian-2B + S_Saharawi-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_Abkhasian-1B + S_Eskimo_Naukan-2A | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
32 | 441.4785 | 1,449.7 |
S_North_Ossetian-2B + S_Madiga-1B | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
9 | 56.6974 | 3,174.7 |
S_Abkhasian-1B + S_Mansi-2B | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Sindhi-2A | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_Abkhasian-1B + S_Bulgarian-1B | Discordant | SGDP | 136,021,995 – 136,976,283 |
954,288.0 |
0.30225436 |
28 | 700.8617 | 799.0 |
S_North_Ossetian-2B + S_Bulgarian-1A | Discordant | SGDP | 136,394,329 – 136,566,051 |
171,722.0 |
0.02943990 |
18 | 106.9785 | 3,365.2 |
S_Abkhasian-1B + S_Bulgarian-2A | Discordant | SGDP | 135,760,098 – 136,785,841 |
1,025,743.0 |
0.10319507 |
16 | 575.9127 | 555.6 |
S_North_Ossetian-2B + S_English-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_Abkhasian-1B + S_Georgian-2B | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Finnish-1A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_Abkhasian-1B + S_Hungarian-2A | Discordant | SGDP | 136,555,141 – 136,762,052 |
206,910.5 |
0.02601890 |
11 | 121.1322 | 1,816.2 |
S_North_Ossetian-2B + S_Saami-2B | Discordant | SGDP | 136,555,141 – 136,976,283 |
421,142.0 |
0.25682418 |
32 | 408.6075 | 1,566.3 |
S_Abkhasian-1B + S_Druze-1A | Discordant | SGDP | 136,080,619 – 136,566,051 |
485,431.5 |
0.04702322 |
20 | 271.6257 | 1,472.6 |
S_North_Ossetian-2B + S_Icelandic-1B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_Abkhasian-1B + S_Palestinian-1A | Discordant | SGDP | 136,555,141 – 136,762,052 |
206,910.5 |
0.02601890 |
10 | 121.1322 | 1,651.1 |
S_North_Ossetian-2B + S_Jordanian-3A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
20 | 111.6004 | 3,584.2 |
S_Abkhasian-1B + S_Sardinian-1A | Discordant | SGDP | 135,597,516 – 136,785,841 |
1,188,325.0 |
0.26173649 |
27 | 780.7852 | 691.6 |
S_North_Ossetian-2B + S_Orcadian-2A | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
6 | 56.6974 | 2,116.5 |
S_Abkhasian-1B + S_North_Ossetian-2A | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
32 | 441.4785 | 1,449.7 |
S_North_Ossetian-2B + S_Tajik-2A | Discordant | SGDP | 136,556,402 – 137,629,015 |
1,072,613.5 |
0.96585764 |
56 | 1,288.5406 | 869.2 |
S_Abkhasian-1B + S_Adygei-1A | Discordant | SGDP | 135,597,516 – 136,566,051 |
968,535.0 |
0.22556769 |
40 | 646.3510 | 1,237.7 |
S_North_Ossetian-2B + B_Crete-2A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
16 | 111.6004 | 2,867.4 |
S_Abkhasian-1B + S_Adygei-2B | Discordant | SGDP | 135,597,516 – 136,566,051 |
968,535.0 |
0.22556769 |
47 | 646.3510 | 1,454.3 |
S_North_Ossetian-2B + S_Pima-1B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_Abkhasian-1B + S_Spanish-1A | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
35 | 441.4785 | 1,585.6 |
S_North_Ossetian-2B + S_Chukchi-1B | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
6 | 56.6974 | 2,116.5 |
S_Abkhasian-1B + S_Yemenite_Jew-1A | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
40 | 441.4785 | 1,812.1 |
S_North_Ossetian-2B + S_Brahmin-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
19 | 111.6004 | 3,405.0 |
S_Abkhasian-1B + B_Sardinian-3A | Discordant | SGDP | 135,760,098 – 136,785,841 |
1,025,743.0 |
0.10319507 |
9 | 575.9127 | 312.5 |
S_North_Ossetian-2B + S_Burusho-2B | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
6 | 56.6974 | 2,116.5 |
S_Abkhasian-1B + B_Sardinian-3B | Discordant | SGDP | 135,597,516 – 136,566,051 |
968,535.0 |
0.22556769 |
39 | 646.3510 | 1,206.8 |
S_North_Ossetian-2B + S_Punjabi-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_Abkhasian-1B + B_Karitiana-3B | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Punjabi-4A | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
6 | 56.6974 | 2,116.5 |
S_Abkhasian-1B + S_Chane-1A | Discordant | SGDP | 136,555,141 – 136,762,052 |
206,910.5 |
0.02601890 |
12 | 121.1322 | 1,981.3 |
S_North_Ossetian-2B + S_Atayal-1A | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_Abkhasian-1B + S_Pima-1B | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
43 | 441.4785 | 1,948.0 |
S_North_Ossetian-2B + S_English-1A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_Abkhasian-1B + S_Pima-2B | Discordant | SGDP | 135,760,098 – 136,566,051 |
805,953.0 |
0.06702628 |
38 | 441.4785 | 1,721.5 |
S_North_Ossetian-2B + S_BantuKenya-1A | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Mozabite-1A | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Estonian-1B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_North_Ossetian-2B + S_Mixtec-2B | Discordant | SGDP | 136,555,141 – 136,642,220 |
87,079.0 |
0.01737440 |
5 | 56.6974 | 1,763.7 |
S_North_Ossetian-2B + S_Finnish-3A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Mongola-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Saami-1B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Tubalar-1A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
19 | 111.6004 | 3,405.0 |
S_North_Ossetian-2B + S_French-2A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
19 | 111.6004 | 3,405.0 |
S_North_Ossetian-2B + S_Tlingit-1B | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Greek-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Aleut-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_North_Ossetian-2B + S_Iranian-1B | Discordant | SGDP | 136,394,329 – 136,566,051 |
171,722.0 |
0.02943990 |
18 | 106.9785 | 3,365.2 |
S_North_Ossetian-2B + S_Cambodian-1A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
22 | 111.6004 | 3,942.6 |
S_North_Ossetian-2B + S_Tuscan-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_North_Ossetian-2B + S_Naxi-2B | Discordant | SGDP | 136,555,141 – 136,587,056 |
31,914.5 |
0.00700724 |
6 | 21.9247 | 5,473.3 |
S_North_Ossetian-2B + S_Kyrgyz-2A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Dai-3B | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Orcadian-1B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
21 | 111.6004 | 3,763.4 |
S_North_Ossetian-2B + S_Miao-2A | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Lezgin-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Uygur-1A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
19 | 111.6004 | 3,405.0 |
S_North_Ossetian-2B + S_Spanish-2A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Xibo-1A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_North_Ossetian-2B + S_Turkish-1B | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Yi-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Yemenite_Jew-1B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
21 | 111.6004 | 3,763.4 |
S_North_Ossetian-2B + S_Mozabite-2A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
22 | 111.6004 | 3,942.6 |
S_North_Ossetian-2B + B_French-3B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Xibo-2A | Discordant | SGDP | 136,566,014 – 136,566,051 |
36.5 |
0.00000127 |
4 | 1.0185 | 78,544.1 |
S_North_Ossetian-2B + S_Piapoco-1A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
S_North_Ossetian-2B + S_Kinh-2A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
20 | 111.6004 | 3,584.2 |
S_North_Ossetian-2B + S_Pima-2A | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
17 | 111.6004 | 3,046.6 |
S_North_Ossetian-2B + S_Dusun-2B | Discordant | SGDP | 136,389,749 – 136,566,051 |
176,302.0 |
0.03246927 |
18 | 111.6004 | 3,225.8 |
Data shown in this table can be downloaded from this page.
α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
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